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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
pCHi-C
12
total RNA-seq
6
Hi-C
4
ATAC-seq
3
ChIP-seq
Assay category
12
Transcription
6
3D chromatin structure
4
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
621
February, 2021
403
November, 2017
343
August, 2017
340
May, 2020
271
August, 2021
255
October, 2019
250
May, 2021
213
June, 2019
200
May, 2022
168
July, 2018
154
February, 2023
97
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
September, 2018
70
May, 2019
59
September, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
March, 2020
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
17
bigWig
13
bam
12
tsv
6
bedpe bed3+
6
hic
3
bed narrowPeak
Organism
25
Homo sapiens
Biosample type
18
tissue
7
cell line
in vitro differentiated cells
Organ
13
pancreas
6
epithelium
4
heart
4
musculature of body
blood vessel
3
vasculature
2
liver
1
vein
Project
18
AMP
7
T1D
Genome assembly (visualization)
23
hg19
13
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
pCHi-C
biosample_type!
in vitro differentiated cells
month_released!
September, 2018
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
25 results
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total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
2
2
2
psoas muscle
2
2
heart left ventricle
1
1
heart right ventricle
1
1
liver
1
1
+ See 1 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
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