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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
25
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
200
DNA binding
29
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
23
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
12
February, 2020
11
July, 2019
6
October, 2017
1
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
21
tsv
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
251
Homo sapiens
Biosample type
251
tissue
primary cell
Organ
545
connective tissue
adipose tissue
386
pancreas
377
heart
316
kidney
309
liver
251
brain
198
blood vessel
198
vasculature
158
bone element
139
artery
122
limb
99
epithelium
79
musculature of body
52
eye
43
nerve
19
lung
18
ureter
16
skeleton
10
embryo
4
gonad
4
ovary
2
pituitary gland
1
blood
1
bodily fluid
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
251
AMP
Genome assembly (visualization)
194
GRCh38
135
hg19
Lab
251
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
pCHi-C
biosample_type!
primary cell
files.file_type!
fastq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
251 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
FAIRE-seq
RRBS
tissue
brain
11
12
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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