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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ATAC-seq
54
ChIP-seq
Assay category
106
DNA accessibility
54
DNA binding
Target of assay
38
histone
38
histone modification
21
broad histone mark
17
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
80
August, 2021
40
May, 2024
38
May, 2022
2
February, 2023
Available data
160
bed narrowPeak
84
bigWig
66
txt
64
xls
25
bam
25
fastq
10
tsv
3
bed bedgraph
3
hic
2
bed bed3+
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
vcf
Organism
160
Homo sapiens
Biosample type
142
tissue
primary cell
14
cell line
4
in vitro differentiated cells
Organ
64
kidney
40
heart
34
liver
18
pancreas
2
connective tissue
Project
160
AMP
Genome assembly (visualization)
104
GRCh38
56
hg19
Lab
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
pCHi-C
biosample_type!
primary cell
lab.title!
AMP-T2D consortium
month_released!
October, 2017
BIOSAMPLE
ASSAY
160 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
left cardiac atrium
40
liver
20
islet of Langerhans
18
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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