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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
582
ChIP-seq
238
total RNA-seq
67
ATAC-seq
8
DNase-seq
5
WGBS
3
Hi-C
pCHi-C
3
single cell RNA-seq
3
small RNA-seq
2
STARR-seq
1
RRBS
1
whole genome sequencing assay
Assay category
582
DNA binding
244
Transcription
75
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
343
transcription factor
120
histone modification
119
histone
116
control
82
recombinant protein
64
narrow histone mark
59
RNA binding protein
55
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
193
May, 2020
68
February, 2021
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
35
February, 2023
33
August, 2021
32
October, 2019
9
July, 2019
5
January, 2019
5
May, 2019
3
February, 2020
2
June, 2019
2
March, 2020
1
December, 2018
Available data
769
bam
694
bigWig
509
bed narrowPeak
465
fastq
381
bigBed narrowPeak
223
tsv
88
tagAlign
65
bed broadPeak
65
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
913
Homo sapiens
Biosample type
465
cell line
433
tissue
primary cell
15
in vitro differentiated cells
Organ
774
liver
642
connective tissue
599
pancreas
487
adipose tissue
377
heart
316
kidney
263
brain
198
blood vessel
198
vasculature
158
bone element
139
artery
122
limb
118
epithelium
81
musculature of body
61
blood
61
bodily fluid
52
eye
43
nerve
37
embryo
24
spleen
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
913
AMP
Genome assembly (visualization)
702
hg19
646
GRCh38
Lab
842
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
pCHi-C
biosample_type!
primary cell
BIOSAMPLE
ASSAY
913 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
single cell RNA-seq
small RNA-seq
STARR-seq
RRBS
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
1
smooth muscle cell of the coronary artery
6
52
8
tissue
liver
145
167
20
2
3
1
1
1
1
coronary artery
5
1
36
2
tibial artery
23
1
1
2
right lobe of liver
10
3
1
2
1
2
pulmonary artery
2
in vitro differentiated cells
hepatocyte
15
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