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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
6
DNase-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
small RNA-seq
1
total RNA-seq
Assay category
19
DNA binding
6
DNA accessibility
5
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
11
histone
11
histone modification
8
control
7
narrow histone mark
4
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
16
June, 2019
10
July, 2019
9
November, 2017
Available data
31
bigWig
30
bam
20
bed narrowPeak
20
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
9
bed bed3+
9
fastq
5
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
35
Homo sapiens
Biosample type
tissue
35
primary cell
Organ
509
epithelium
441
pancreas
428
liver
133
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
53
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
2
adipose tissue
1
pericardium
Project
35
AMP
Genome assembly (visualization)
33
hg19
25
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_title!
pCHi-C
biosample_type!
tissue
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
RRBS
small RNA-seq
total RNA-seq
primary cell
skeletal muscle satellite cell
8
1
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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