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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
15
ChIP-seq
9
total RNA-seq
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA accessibility
15
DNA binding
11
Transcription
4
3D chromatin structure
1
DNA sequencing
Target of assay
12
transcription factor
control
3
histone
3
histone modification
3
nucleotide modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
32
August, 2021
16
May, 2021
6
February, 2023
3
November, 2020
2
March, 2020
2
March, 2023
1
December, 2018
1
January, 2018
1
November, 2017
1
November, 2019
1
October, 2019
1
October, 2022
Available data
509
bigWig
bam
404
bed narrowPeak
365
fastq
355
bigBed narrowPeak
114
tsv
59
bed broadPeak
59
bigBed broadPeak
16
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
63
Homo sapiens
Biosample type
825
tissue
460
primary cell
91
in vitro differentiated cells
67
cell line
3
stem cell
Organ
29
liver
26
pancreas
25
epithelium
2
kidney
1
blood
1
bodily fluid
Project
60
AMP
5
T1D
2
community
Genome assembly (visualization)
20
hg19
1
GRCh38
Lab
30
Bing Ren, UCSD
27
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
25
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
pCHi-C
files.file_type!
bam
month_released!
December, 2017
target.investigated_as!
control
BIOSAMPLE
ASSAY
67 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
18
1
3
3
2
2
1
HepG2
15
9
2
2
1
EndoC-BH1
1
1
HEK293T
2
GM12878
1
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