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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
100
total RNA-seq
3
ATAC-seq
1
WGBS
Assay category
398
DNA binding
100
Transcription
3
DNA accessibility
1
DNA methylation
Target of assay
349
transcription factor
81
recombinant protein
63
RNA binding protein
31
histone
31
histone modification
30
chromatin remodeller
16
narrow histone mark
15
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
553
bam
502
bigWig
427
fastq
389
bed narrowPeak
347
bigBed narrowPeak
110
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
502
Homo sapiens
Biosample type
1547
tissue
590
primary cell
502
cell line
255
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
vasculature
55
blood
55
bodily fluid
48
epithelium
48
pancreas
8
embryo
Project
498
AMP
4
T1D
Genome assembly (visualization)
497
hg19
434
GRCh38
Lab
488
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
48
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
pCHi-C
month_released!
April, 2019
October, 2019
BIOSAMPLE
ASSAY
502 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
13
33
2
H1-hESC
8
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