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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
378
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
31
August, 2021
5
January, 2019
1
December, 2018
1
February, 2021
Available data
367
fastq
366
bam
332
bigWig
308
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
14
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
399
Homo sapiens
Biosample type
399
cell line
360
tissue
15
in vitro differentiated cells
14
primary cell
Organ
399
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
17
kidney
8
embryo
Project
399
AMP
Genome assembly (visualization)
329
hg19
268
GRCh38
Lab
368
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
pCHi-C
organ_slims!
intestine
BIOSAMPLE
ASSAY
399 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
378
14
2
2
1
1
1
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