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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
136
total RNA-seq
42
ATAC-seq
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
141
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
111
histone
111
histone modification
56
broad histone mark
narrow histone mark
48
transcription factor
36
control
11
RNA binding protein
3
chromatin remodeller
Date released
119
May, 2021
52
August, 2017
35
August, 2021
31
February, 2018
30
December, 2017
26
February, 2021
16
February, 2023
8
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
248
bam
218
bigWig
129
tsv
107
fastq
91
bed narrowPeak
26
tagAlign
21
bed bed3+
12
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
4
bedpe bed3+
4
hic
3
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
332
Homo sapiens
Biosample type
1956
tissue
641
primary cell
554
cell line
332
in vitro differentiated cells
5
stem cell
Organ
80
connective tissue
21
embryo
16
epithelium
10
liver
pancreas
1
heart
Project
332
AMP
Genome assembly (visualization)
254
hg19
224
GRCh38
4
hg18
Lab
288
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
assay_title!
pCHi-C
organ_slims!
pancreas
target.investigated_as!
narrow histone mark
nucleotide modification
BIOSAMPLE
ASSAY
332 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
51
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
29
7
6
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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