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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1113
ChIP-seq
788
total RNA-seq
405
ATAC-seq
282
single cell RNA-seq
207
DNase-seq
86
RNA microarray
pCHi-C
36
snATAC-seq
23
Hi-C
21
RRBS
21
WGBS
15
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1113
DNA binding
1085
Transcription
653
DNA accessibility
43
DNA methylation
23
3D chromatin structure
Target of assay
833
histone modification
832
histone
427
narrow histone mark
405
broad histone mark
198
control
87
transcription factor
33
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
340
May, 2020
286
August, 2017
271
October, 2019
232
August, 2021
229
May, 2021
217
June, 2019
168
July, 2018
161
February, 2021
120
May, 2019
106
February, 2023
96
July, 2019
91
November, 2017
80
April, 2019
73
September, 2018
66
May, 2022
53
October, 2018
49
April, 2018
48
December, 2017
47
September, 2023
40
May, 2024
39
November, 2019
26
November, 2018
23
February, 2020
22
October, 2017
21
March, 2020
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
1
August, 2022
1
January, 2018
1
March, 2023
Available data
2073
bam
1950
bigWig
1266
bed narrowPeak
920
tsv
660
bigBed narrowPeak
574
fastq
330
tagAlign
259
bed broadPeak
235
bed bed3+
223
bigBed broadPeak
157
txt
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
14
hic
11
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3002
Homo sapiens
Biosample type
2265
tissue
745
primary cell
656
cell line
389
in vitro differentiated cells
6
stem cell
Organ
698
pancreas
583
connective tissue
adipose tissue
374
liver
335
kidney
323
heart
284
brain
269
epithelium
169
vasculature
163
blood vessel
158
bone element
122
limb
95
musculature of body
75
artery
57
eye
43
nerve
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
2725
AMP
218
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
1961
GRCh38
1953
hg19
Lab
2435
AMP-T2D consortium
Klaus Kaestner, Upenn
274
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
141
inconsistent ontology term
27
inconsistent control
10
audit script error
Audit category:
58
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
pCHi-C
lab.title!
Klaus Kaestner, Upenn
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
3010 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
Hi-C
RRBS
WGBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
71
292
68
6
1
7
3
1
1
4
liver
145
167
20
1
2
1
1
3
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
1
4
+ See 160 more…
primary cell
monocyte
85
54
15
1
pancreatic beta cell
13
10
7
12
pancreatic alpha cell
13
10
6
12
CD8-positive, alpha-beta T cell
33
4
2
pancreatic ductal cell
13
4
4
10
+ See 84 more…
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