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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
241
ChIP-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
pCHi-C
9
RRBS
6
Hi-C
3
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
259
DNA accessibility
241
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
208
histone
208
histone modification
107
broad histone mark
101
narrow histone mark
31
control
5
RNA binding protein
5
transcription factor
Date released
190
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
July, 2018
47
February, 2021
45
August, 2017
43
April, 2018
31
June, 2019
26
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2017
1
November, 2018
Available data
584
bigWig
576
bam
403
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
bed broadPeak
37
bigBed broadPeak
28
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
997
Homo sapiens
Biosample type
2412
tissue
997
primary cell
531
cell line
388
in vitro differentiated cells
6
stem cell
Organ
384
epithelium
346
pancreas
31
connective tissue
26
kidney
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
484
AMP
324
HPAP
188
T1D
1
ITG
Genome assembly (visualization)
565
hg19
479
GRCh38
Lab
449
AMP-T2D consortium
324
Klaus Kaestner, Upenn
223
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
pCHi-C
files.file_type!
bed broadPeak
organ_slims!
vasculature
BIOSAMPLE
ASSAY
997 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
pancreatic alpha cell
52
13
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
13
23
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
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