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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
98
total RNA-seq
pCHi-C
8
snATAC-seq
Assay category
117
DNA binding
98
Transcription
8
DNA accessibility
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
170
May, 2021
45
May, 2020
8
January, 2021
Available data
215
bigWig
180
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
Organism
223
Homo sapiens
Biosample type
223
primary cell
51
tissue
47
in vitro differentiated cells
5
cell line
Organ
8
blood
8
bodily fluid
Project
188
T1D
35
AMP
Genome assembly (visualization)
215
hg19
180
GRCh38
Lab
523
AMP-T2D consortium
324
Klaus Kaestner, Upenn
223
Kyle Gaulton, UCSD
1
ITG
Audit category:
4
inconsistent ontology term
assay_title!
pCHi-C
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
223 results
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ChIP-seq
total RNA-seq
snATAC-seq
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
peripheral blood mononuclear cell
8
B cell
2
T follicular helper cell
2
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