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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
173
single cell RNA-seq
117
total RNA-seq
116
ATAC-seq
87
RNA microarray
26
snATAC-seq
pCHi-C
16
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
290
Transcription
185
DNA binding
143
DNA accessibility
21
DNA methylation
16
3D chromatin structure
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
114
August, 2017
February, 2023
93
February, 2021
52
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
25
February, 2020
19
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
11
March, 2020
8
January, 2021
8
October, 2017
4
July, 2018
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
1
April, 2019
1
August, 2022
1
May, 2021
1
November, 2019
Available data
bam
1772
bigWig
1052
tsv
921
bed narrowPeak
561
bigBed narrowPeak
376
fastq
238
tagAlign
212
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
153
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
747
Homo sapiens
Biosample type
749
tissue
375
primary cell
82
in vitro differentiated cells
68
cell line
3
stem cell
Organ
201
kidney
142
heart
84
bone element
72
liver
56
pancreas
47
connective tissue
46
adipose tissue
37
musculature of body
36
brain
19
lung
18
eye
10
blood vessel
10
vasculature
8
limb
4
artery
4
gonad
4
ovary
1
epithelium
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
673
AMP
47
KPMP
19
LungMap
10
T1D
Genome assembly (visualization)
120
GRCh38
73
hg19
Lab
442
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
9
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
85
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_title!
pCHi-C
files.file_type!
bam
lab.title!
Mark McCarthy, Oxford
month_released!
February, 2023
BIOSAMPLE
ASSAY
749 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
64
49
75
6
1
1
islet of Langerhans
41
21
18
5
3
1
4
bone element
84
liver
23
1
20
20
1
1
3
left cardiac atrium
40
18
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