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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
39
ATAC-seq
28
ChIP-seq
27
DNase-seq
15
total RNA-seq
3
Hi-C
pCHi-C
2
WGBS
1
small RNA-seq
Assay category
109
Transcription
66
DNA accessibility
28
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
36
February, 2023
27
June, 2019
15
April, 2019
13
July, 2019
8
May, 2019
5
May, 2024
4
March, 2020
3
February, 2020
3
October, 2019
2
May, 2021
Available data
108
tsv
78
bed narrowPeak
73
bam
62
bigWig
34
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
208
Homo sapiens
Biosample type
208
tissue
66
cell line
10
primary cell
1
in vitro differentiated cells
Organ
511
connective tissue
453
adipose tissue
425
pancreas
290
liver
278
kidney
208
heart
158
bone element
78
brain
77
blood vessel
77
vasculature
72
limb
53
artery
53
musculature of body
50
eye
19
lung
19
nerve
18
ureter
16
skeleton
16
spleen
15
epithelium
1
pituitary gland
1
skin of body
1
spinal cord
Project
208
AMP
Genome assembly (visualization)
91
GRCh38
52
hg19
Lab
203
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
assay_title!
pCHi-C
files.file_type!
bed bedMethyl
target.investigated_as!
histone
BIOSAMPLE
ASSAY
208 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
WGBS
small RNA-seq
tissue
coronary artery
36
3
2
1
heart left ventricle
18
2
11
3
3
1
2
heart
1
2
18
4
1
1
left cardiac atrium
18
5
1
heart right ventricle
17
2
1
1
1
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