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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1011
total RNA-seq
799
ChIP-seq
176
ATAC-seq
173
single cell RNA-seq
87
RNA microarray
26
snATAC-seq
25
WGBS
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1200
Transcription
799
DNA binding
208
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
539
histone modification
538
histone
291
narrow histone mark
247
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
258
August, 2017
223
August, 2021
210
October, 2019
193
May, 2020
120
July, 2018
80
April, 2019
76
November, 2017
74
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
February, 2023
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
22
February, 2020
19
April, 2020
19
October, 2017
18
March, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1820
bam
1702
bigWig
1039
tsv
856
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
153
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2349
Homo sapiens
Biosample type
2352
tissue
909
primary cell
525
cell line
372
in vitro differentiated cells
6
stem cell
Organ
542
connective tissue
483
adipose tissue
466
pancreas
357
liver
247
heart
231
kidney
226
brain
150
bone element
92
blood vessel
vasculature
86
limb
41
nerve
36
musculature of body
34
artery
23
spleen
19
lung
18
eye
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
epithelium
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2274
AMP
47
KPMP
19
LungMap
12
T1D
Genome assembly (visualization)
1568
GRCh38
1461
hg19
Lab
2021
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
33
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
pCHi-C
files.file_type!
bed broadPeak
month_released!
February, 2023
organ_slims!
vasculature
BIOSAMPLE
ASSAY
2352 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
287
65
55
6
5
3
1
1
4
1
adipose tissue
382
2
2
3
liver
167
145
20
1
3
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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