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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1003
total RNA-seq
784
ChIP-seq
177
ATAC-seq
151
DNase-seq
87
RNA microarray
87
single cell RNA-seq
26
snATAC-seq
pCHi-C
15
small RNA-seq
13
Hi-C
9
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
1105
Transcription
784
DNA binding
358
DNA accessibility
13
3D chromatin structure
11
DNA methylation
Target of assay
533
histone modification
532
histone
286
narrow histone mark
246
broad histone mark
171
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
279
August, 2017
230
October, 2019
193
May, 2020
137
August, 2021
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
February, 2023
50
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
37
May, 2021
23
April, 2019
23
October, 2017
22
February, 2020
20
November, 2018
19
April, 2020
16
March, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1775
bam
1615
bigWig
944
tsv
783
bed narrowPeak
473
bigBed narrowPeak
377
fastq
238
tagAlign
186
bed broadPeak
178
bed bed3+
153
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2356
Homo sapiens
Biosample type
2365
tissue
961
primary cell
583
cell line
372
in vitro differentiated cells
6
stem cell
Organ
543
connective tissue
484
adipose tissue
480
pancreas
359
liver
298
kidney
heart
261
brain
150
bone element
121
limb
96
blood vessel
96
vasculature
78
musculature of body
43
nerve
38
artery
22
spleen
21
eye
19
lung
18
ureter
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
epithelium
1
lymph node
1
skin of body
1
spinal cord
Project
2287
AMP
47
KPMP
19
LungMap
12
T1D
Genome assembly (visualization)
1658
GRCh38
1601
hg19
Lab
2072
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
33
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
pCHi-C
files.file_type!
bigBed bedMethyl
month_released!
February, 2023
organ_slims!
heart
BIOSAMPLE
ASSAY
2365 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
small RNA-seq
Hi-C
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
287
71
57
1
6
5
3
1
4
adipose tissue
382
2
2
1
liver
167
145
20
2
1
1
1
3
kidney
49
27
75
13
64
6
1
1
bone element
84
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