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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1022
total RNA-seq
647
ChIP-seq
257
ATAC-seq
180
single cell RNA-seq
177
DNase-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
16
small RNA-seq
11
RRBS
9
Hi-C
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1218
Transcription
647
DNA binding
466
DNA accessibility
36
DNA methylation
9
3D chromatin structure
Target of assay
434
histone modification
433
histone
223
broad histone mark
210
narrow histone mark
127
control
88
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
225
August, 2017
189
October, 2019
163
June, 2019
143
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
25
February, 2020
March, 2020
19
April, 2020
17
November, 2018
16
November, 2017
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1874
bam
1745
bigWig
1048
tsv
968
bed narrowPeak
548
bigBed narrowPeak
353
fastq
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2468
Homo sapiens
Biosample type
2470
tissue
970
primary cell
629
cell line
345
in vitro differentiated cells
6
stem cell
Organ
538
connective tissue
480
pancreas
479
adipose tissue
306
heart
299
kidney
288
liver
158
bone element
145
brain
130
blood vessel
130
vasculature
122
limb
73
artery
62
musculature of body
52
eye
43
nerve
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
2378
AMP
47
KPMP
26
T1D
19
LungMap
Genome assembly (visualization)
1718
GRCh38
1618
hg19
Lab
2119
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
pCHi-C
files.file_type!
tagAlign
month_released!
March, 2020
organ_slims!
spleen
BIOSAMPLE
ASSAY
2470 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
290
60
66
6
1
7
1
3
1
4
adipose tissue
382
2
3
3
liver
166
75
20
1
2
3
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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