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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
834
ChIP-seq
634
total RNA-seq
253
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
834
DNA binding
828
Transcription
461
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
596
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
237
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
159
February, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2024
39
May, 2021
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
20
March, 2020
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
January, 2018
Available data
1467
bam
1348
bigWig
971
bed narrowPeak
658
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2256
Homo sapiens
Biosample type
2264
tissue
1069
primary cell
654
cell line
385
in vitro differentiated cells
5
stem cell
Organ
545
connective tissue
504
pancreas
adipose tissue
360
liver
310
heart
299
kidney
263
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
80
musculature of body
73
artery
52
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2168
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1437
GRCh38
1330
hg19
Lab
1913
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
pCHi-C
files.file_type!
vcf
month_released!
January, 2018
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
2264 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
292
68
6
1
7
3
1
1
4
liver
145
167
20
1
2
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
4
1
1
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