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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1015
total RNA-seq
900
ChIP-seq
219
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1211
Transcription
900
DNA binding
419
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
186
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
284
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
69
February, 2023
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
40
November, 2019
38
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
20
March, 2020
19
April, 2020
15
May, 2023
7
December, 2018
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1868
bam
1766
bigWig
1056
tsv
952
bed narrowPeak
555
bigBed narrowPeak
346
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
147
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2669
Homo sapiens
Biosample type
2678
tissue
848
primary cell
628
cell line
342
in vitro differentiated cells
6
stem cell
Organ
546
connective tissue
487
adipose tissue
453
pancreas
360
liver
310
heart
299
kidney
263
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
81
musculature of body
73
artery
52
eye
43
nerve
19
lung
18
ureter
17
spleen
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2608
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1845
GRCh38
1719
hg19
Lab
2378
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
pCHi-C
lab.title!
Kyle Gaulton, UCSD
month_released!
January, 2019
organ_slims!
skeleton
BIOSAMPLE
ASSAY
2678 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
281
71
39
6
1
1
3
1
1
4
adipose tissue
382
2
3
3
liver
167
145
20
1
2
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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