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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
996
total RNA-seq
712
ChIP-seq
179
single cell RNA-seq
174
DNase-seq
163
ATAC-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1191
Transcription
712
DNA binding
367
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
460
histone modification
459
histone
264
broad histone mark
195
narrow histone mark
160
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
20
March, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
1
August, 2022
Available data
1720
bam
1612
bigWig
1044
tsv
770
bed narrowPeak
514
bigBed narrowPeak
376
fastq
208
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
153
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
Organism
2408
Homo sapiens
Biosample type
2417
tissue
949
primary cell
620
cell line
365
in vitro differentiated cells
6
stem cell
Organ
543
connective tissue
485
adipose tissue
481
pancreas
354
liver
295
kidney
266
heart
176
brain
150
bone element
81
musculature of body
71
blood vessel
71
vasculature
53
limb
24
spleen
19
lung
18
ureter
12
artery
8
skeleton
4
eye
1
epithelium
1
nerve
1
pericardium
1
spinal cord
Project
2339
AMP
47
KPMP
19
LungMap
12
T1D
Genome assembly (visualization)
1662
GRCh38
1558
hg19
Lab
2086
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
33
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
pCHi-C
lab.title!
Mark McCarthy, Oxford
month_released!
February, 2023
October, 2019
BIOSAMPLE
ASSAY
2417 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
RNA microarray
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
1
3
islet of Langerhans
273
50
6
1
42
5
3
1
1
4
liver
166
140
1
2
20
3
1
1
1
kidney
49
23
64
13
75
6
1
1
1
bone element
84
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