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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
997
total RNA-seq
784
ChIP-seq
200
ATAC-seq
151
DNase-seq
87
RNA microarray
87
single cell RNA-seq
28
snATAC-seq
pCHi-C
19
WGBS
15
small RNA-seq
12
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1099
Transcription
784
DNA binding
383
DNA accessibility
29
DNA methylation
12
3D chromatin structure
Target of assay
533
histone modification
532
histone
286
narrow histone mark
246
broad histone mark
171
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
230
October, 2019
193
May, 2020
137
August, 2021
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
59
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
November, 2019
37
May, 2021
26
November, 2018
23
April, 2019
22
February, 2020
22
October, 2017
19
April, 2020
16
March, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1736
bam
1595
bigWig
929
tsv
791
bed narrowPeak
473
bigBed narrowPeak
376
fastq
238
tagAlign
185
bed broadPeak
178
bed bed3+
157
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
7
hic
6
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2392
Homo sapiens
Biosample type
2401
tissue
1058
primary cell
574
cell line
383
in vitro differentiated cells
6
stem cell
Organ
545
connective tissue
486
adipose tissue
464
pancreas
360
liver
heart
299
kidney
263
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
81
musculature of body
73
artery
52
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2305
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1628
GRCh38
1601
hg19
Lab
2091
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
pCHi-C
lab.title!
Stephen Parker, UMich
month_released!
November, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
2401 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
273
71
48
1
6
7
2
1
1
4
adipose tissue
382
2
3
3
liver
167
145
20
2
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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