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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
910
total RNA-seq
731
ChIP-seq
179
single cell RNA-seq
176
DNase-seq
159
ATAC-seq
87
RNA microarray
26
snATAC-seq
pCHi-C
18
WGBS
16
small RNA-seq
15
Hi-C
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1105
Transcription
731
DNA binding
364
DNA accessibility
24
DNA methylation
15
3D chromatin structure
Target of assay
504
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
158
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
November, 2019
39
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
20
March, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1698
bam
1575
bigWig
944
tsv
835
bed narrowPeak
539
bigBed narrowPeak
202
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
153
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2331
Homo sapiens
Biosample type
2333
tissue
924
primary cell
634
cell line
300
in vitro differentiated cells
6
stem cell
Organ
487
connective tissue
428
adipose tissue
306
liver
300
pancreas
299
kidney
274
heart
262
brain
150
bone element
122
limb
97
blood vessel
97
vasculature
55
musculature of body
43
nerve
38
artery
24
spleen
21
eye
19
lung
18
ureter
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
epithelium
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2255
AMP
47
KPMP
19
LungMap
12
T1D
Genome assembly (visualization)
1627
GRCh38
1502
hg19
Lab
2000
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
33
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
assay_title!
pCHi-C
month_released!
August, 2017
February, 2023
November, 2019
BIOSAMPLE
ASSAY
2333 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
2
liver
167
97
1
2
20
1
1
islet of Langerhans
179
29
6
38
5
2
1
4
kidney
49
27
64
13
75
6
1
1
1
bone element
84
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