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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
453
total RNA-seq
84
RNA microarray
pCHi-C
10
ATAC-seq
7
Hi-C
6
single cell RNA-seq
3
snDrop-seq
2
ChIP-seq
Assay category
459
Transcription
10
DNA accessibility
7
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
545
February, 2021
284
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
20
March, 2020
19
April, 2020
15
May, 2023
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
461
bam
460
tsv
455
bigWig
89
txt
10
bed narrowPeak
7
bedpe bed3+
7
hic
6
csv
Organism
565
Homo sapiens
Biosample type
565
tissue
102
cell line
48
primary cell
30
in vitro differentiated cells
Organ
444
connective tissue
386
adipose tissue
150
bone element
8
kidney
8
pancreas
8
skeleton
6
limb
4
heart
4
musculature of body
3
liver
2
blood vessel
2
vasculature
Project
561
AMP
4
T1D
Genome assembly (visualization)
470
hg19
461
GRCh38
Lab
565
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
5
audit script error
assay_title!
pCHi-C
month_released!
January, 2021
BIOSAMPLE
ASSAY
565 results
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total RNA-seq
RNA microarray
ATAC-seq
Hi-C
single cell RNA-seq
snDrop-seq
ChIP-seq
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
2
2
2
kidney
5
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