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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
47
single cell RNA-seq
22
total RNA-seq
16
ATAC-seq
4
DNase-seq
pCHi-C
1
Hi-C
Assay category
195
DNA binding
69
Transcription
20
DNA accessibility
1
3D chromatin structure
Target of assay
168
histone
168
histone modification
129
narrow histone mark
39
broad histone mark
27
control
Date released
545
February, 2021
284
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
20
March, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
186
bam
160
bigWig
151
bed narrowPeak
49
tagAlign
47
bigBed narrowPeak
8
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
285
Homo sapiens
Biosample type
285
tissue
34
primary cell
30
cell line
8
in vitro differentiated cells
Organ
86
brain
69
limb
51
kidney
42
nerve
26
artery
26
blood vessel
26
vasculature
17
eye
8
heart
6
liver
4
gonad
4
ovary
3
pancreas
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
238
AMP
47
KPMP
Genome assembly (visualization)
163
hg19
161
GRCh38
Lab
238
AMP-T2D consortium
47
KPMP
Audit category:
2
inconsistent ontology term
assay_title!
pCHi-C
month_released!
August, 2020
BIOSAMPLE
ASSAY
285 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
tissue
kidney
4
47
islet of Langerhans
21
14
13
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
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