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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
18
snATAC-seq
pCHi-C
16
ATAC-seq
13
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
70
DNA binding
34
DNA accessibility
13
Transcription
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
83
May, 2021
23
February, 2023
16
January, 2021
Available data
175
bigWig
bam
132
bed narrowPeak
84
tagAlign
51
tsv
24
fastq
txt
2
bed bed3+
Organism
122
Homo sapiens
Biosample type
47
in vitro differentiated cells
43
primary cell
27
tissue
5
cell line
Organ
27
pancreas
8
blood
8
bodily fluid
Project
83
AMP
39
T1D
Genome assembly (visualization)
40
hg19
Lab
534
AMP-T2D consortium
324
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
85
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
assay_title!
pCHi-C
files.file_type!
bam
txt
month_released!
May, 2020
BIOSAMPLE
ASSAY
122 results
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Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
in vitro differentiated cells
embryonic stem cell
37
5
5
primary cell
CD8-positive, alpha-beta T cell
33
2
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
6
11
5
pancreas
4
1
cell line
EndoC_BH1
3
2
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