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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
6
Hi-C
5
RRBS
1
ATAC-seq
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
1
total RNA-seq
Assay category
22
DNA binding
6
3D chromatin structure
5
DNA methylation
2
DNA accessibility
2
Transcription
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
26
August, 2017
5
July, 2019
2
March, 2020
2
May, 2022
1
February, 2020
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
37
Homo sapiens
Biosample type
36
tissue
1
primary cell
Organ
256
pancreas
208
kidney
207
epithelium
heart
92
bone element
87
connective tissue
67
liver
50
eye
50
vasculature
49
blood vessel
47
adipose tissue
41
brain
39
artery
38
musculature of body
19
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
4
gonad
4
ovary
2
vein
1
embryo
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
37
AMP
Genome assembly (visualization)
20
hg19
Lab
37
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
pCHi-C
files.file_type!
bam
lab.title!
Karen Mohlke, UNC
organ_slims!
heart
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
Hi-C
RRBS
ATAC-seq
single cell RNA-seq
snATAC-seq
total RNA-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
primary cell
skeletal muscle cell
1
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