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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
2
STARR-seq
pCHi-C
1
Hi-C
Assay category
113
Transcription
83
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
130
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
4
July, 2019
3
December, 2019
2
October, 2019
Available data
183
bed narrowPeak
bam
131
bigWig
104
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
22
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
208
Homo sapiens
Biosample type
201
tissue
5
primary cell
2
cell line
Organ
256
pancreas
208
kidney
207
epithelium
179
heart
107
liver
92
bone element
87
connective tissue
50
eye
50
vasculature
49
blood vessel
47
adipose tissue
41
brain
39
artery
38
musculature of body
19
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
4
gonad
4
ovary
2
vein
1
embryo
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
161
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
5
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
17
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
1
inconsistent ontology term
assay_title!
pCHi-C
files.file_type!
bam
organ_slims!
intestine
BIOSAMPLE
ASSAY
208 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
STARR-seq
Hi-C
tissue
kidney
75
64
49
6
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
primary cell
epithelial cell of proximal tubule
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
renal cortical epithelial cell
1
cell line
HEK293T
2
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