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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
Assay category
19
DNA binding
Target of assay
952
histone modification
951
histone
485
narrow histone mark
465
broad histone mark
465
transcription factor
343
control
RNA binding protein
89
recombinant protein
31
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
6
November, 2017
5
November, 2018
2
August, 2017
2
December, 2017
2
December, 2018
2
January, 2019
Available data
22
bam
22
bed narrowPeak
22
bigWig
22
fastq
20
bigBed narrowPeak
bed broadPeak
3
bigBed broadPeak
Organism
19
Homo sapiens
Biosample type
15
cell line
2
in vitro differentiated cells
2
tissue
Organ
12
liver
5
blood
5
bodily fluid
2
connective tissue
Project
19
AMP
Genome assembly (visualization)
19
hg19
18
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
8
inconsistent control read length
5
inconsistent control run_type
assay_title!
pCHi-C
files.file_type!
bed broadPeak
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
cell line
HepG2
10
GM12878
5
in vitro differentiated cells
adipocyte
2
tissue
liver
2
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