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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
29
ATAC-seq
18
snATAC-seq
17
total RNA-seq
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
47
DNA accessibility
37
DNA binding
17
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
43
May, 2021
24
May, 2022
23
February, 2023
16
January, 2021
Available data
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
106
Homo sapiens
Biosample type
51
tissue
42
in vitro differentiated cells
8
primary cell
5
cell line
Organ
51
pancreas
8
blood
8
bodily fluid
Project
67
AMP
39
T1D
Genome assembly (visualization)
18
hg19
Lab
1013
AMP-T2D consortium
314
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
106
Kyle Gaulton, UCSD
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
assay_title!
pCHi-C
files.file_type!
bigWig
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
6
11
pancreas
4
1
in vitro differentiated cells
embryonic stem cell
37
5
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
2
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