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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
45
ATAC-seq
6
single cell RNA-seq
6
total RNA-seq
5
WGBS
3
Hi-C
pCHi-C
1
RNA microarray
1
RRBS
Assay category
77
DNA binding
45
DNA accessibility
12
Transcription
6
DNA methylation
3
3D chromatin structure
Target of assay
44
control
33
histone
33
histone modification
22
broad histone mark
11
narrow histone mark
Date released
40
August, 2017
36
February, 2023
18
October, 2018
11
May, 2019
11
October, 2019
10
February, 2021
7
August, 2021
5
February, 2020
2
July, 2019
2
March, 2020
1
May, 2023
1
November, 2019
Available data
627
bam
bigWig
467
tsv
146
bed narrowPeak
93
bigBed narrowPeak
49
fastq
20
bed broadPeak
19
bed bed3+
19
bigBed broadPeak
14
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
143
Homo sapiens
Biosample type
126
tissue
10
cell line
8
primary cell
Organ
322
pancreas
223
epithelium
221
kidney
166
heart
166
liver
109
connective tissue
100
bone element
80
vasculature
79
blood vessel
64
adipose tissue
62
brain
56
artery
51
eye
31
limb
27
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
8
embryo
8
spleen
7
vein
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
144
AMP
Genome assembly (visualization)
45
GRCh38
15
hg19
Lab
144
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
pCHi-C
files.file_type!
bigWig
BIOSAMPLE
ASSAY
144 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
WGBS
Hi-C
RNA microarray
RRBS
tissue
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
aorta
2
4
1
1
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cell line
smooth muscle cell of the coronary artery
2
8
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
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