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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ATAC-seq
26
ChIP-seq
22
total RNA-seq
6
single cell RNA-seq
pCHi-C
3
Hi-C
1
RRBS
1
WGBS
Assay category
71
DNA accessibility
28
Transcription
26
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
Date released
66
February, 2023
28
October, 2019
11
May, 2019
10
February, 2021
6
August, 2021
4
February, 2020
2
July, 2019
2
March, 2020
1
June, 2019
Available data
187
bam
162
bed narrowPeak
bigWig
85
bigBed narrowPeak
72
tsv
17
bed broadPeak
17
bigBed broadPeak
15
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
130
Homo sapiens
Biosample type
111
tissue
10
cell line
9
primary cell
Organ
322
pancreas
223
epithelium
221
kidney
166
heart
166
liver
109
connective tissue
100
bone element
80
vasculature
79
blood vessel
64
adipose tissue
62
brain
56
artery
51
eye
31
limb
27
musculature of body
19
lung
skeleton
14
blood
14
bodily fluid
12
nerve
8
embryo
8
spleen
7
vein
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
130
AMP
Genome assembly (visualization)
43
GRCh38
39
hg19
Lab
130
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
pCHi-C
files.file_type!
bigWig
organ_slims!
skeleton
BIOSAMPLE
ASSAY
130 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
RRBS
WGBS
tissue
coronary artery
35
2
1
retina
15
3
islet of Langerhans
1
2
14
pigmented layer of retina
12
2
aorta
2
4
1
1
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
retinal pigment epithelial cell
1
1
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