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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
36
ChIP-seq
7
Hi-C
6
single cell RNA-seq
5
total RNA-seq
1
WGBS
pCHi-C
Assay category
49
DNA accessibility
36
DNA binding
11
Transcription
7
3D chromatin structure
1
DNA methylation
Target of assay
32
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
35
February, 2023
23
October, 2019
16
February, 2021
12
May, 2019
6
August, 2021
5
February, 2020
5
July, 2019
2
March, 2020
Available data
268
bam
bigWig
200
bed narrowPeak
143
bigBed narrowPeak
73
tsv
47
bed broadPeak
47
bigBed broadPeak
45
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
104
Homo sapiens
Biosample type
87
tissue
10
cell line
7
primary cell
Organ
322
pancreas
223
epithelium
221
kidney
166
heart
166
liver
109
connective tissue
100
bone element
80
vasculature
79
blood vessel
64
adipose tissue
62
brain
56
artery
51
eye
31
limb
27
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
8
embryo
8
spleen
7
vein
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
104
AMP
Genome assembly (visualization)
49
GRCh38
17
hg19
Lab
104
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
pCHi-C
files.file_type!
bigWig
BIOSAMPLE
ASSAY
104 results
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ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
total RNA-seq
WGBS
tissue
coronary artery
35
2
1
tibial nerve
11
1
aorta
2
1
4
1
tibial artery
5
1
gastrocnemius medialis
4
1
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
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