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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
24
ChIP-seq
6
Hi-C
5
RRBS
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
24
DNA binding
7
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
43
June, 2019
11
August, 2017
10
July, 2019
7
May, 2019
4
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
78
Homo sapiens
Biosample type
64
tissue
14
primary cell
Organ
925
pancreas
701
liver
655
connective tissue
517
epithelium
479
adipose tissue
381
heart
352
kidney
226
vasculature
220
blood vessel
158
bone element
154
brain
133
artery
119
limb
78
musculature of body
69
blood
69
bodily fluid
56
eye
42
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
1
lymph node
1
pituitary gland
1
skin of body
Project
78
AMP
Genome assembly (visualization)
60
hg19
53
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
pCHi-C
files.file_type!
tagAlign
month_released!
February, 2020
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
78 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
skeletal muscle tissue
7
4
1
1
1
1
1
gastrocnemius medialis
4
psoas muscle
2
2
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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