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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
32
DNase-seq
3
Hi-C
1
FAIRE-seq
Assay category
170
DNA binding
33
DNA accessibility
3
3D chromatin structure
Target of assay
167
histone
167
histone modification
106
narrow histone mark
61
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
75
October, 2019
64
November, 2017
30
June, 2019
25
May, 2019
6
October, 2017
4
July, 2019
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
24
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
206
Homo sapiens
Biosample type
192
tissue
14
primary cell
Organ
liver
226
pancreas
206
brain
191
heart
183
kidney
153
epithelium
135
vasculature
131
blood vessel
92
limb
87
connective tissue
74
artery
61
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
17
adipose tissue
15
embryo
14
spleen
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
206
AMP
Genome assembly (visualization)
201
GRCh38
144
hg19
Lab
206
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_title!
pCHi-C
organ_slims!
liver
BIOSAMPLE
ASSAY
206 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
brain
11
14
layer of hippocampus
17
angular gyrus
14
caudate nucleus
12
1
temporal lobe
13
+ See 68 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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