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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ATAC-seq
22
ChIP-seq
17
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
40
DNA accessibility
22
DNA binding
2
3D chromatin structure
Target of assay
32
histone
32
histone modification
narrow histone mark
15
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
16
June, 2019
14
September, 2018
9
December, 2017
9
October, 2019
5
September, 2017
3
August, 2017
3
May, 2019
2
July, 2019
2
November, 2017
1
August, 2021
Available data
268
bam
253
bigWig
229
fastq
156
tsv
103
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
19
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
64
Homo sapiens
Biosample type
54
primary cell
9
in vitro differentiated cells
1
cell line
Organ
349
liver
97
brain
94
kidney
88
pancreas
72
heart
70
limb
64
epithelium
60
vasculature
57
blood vessel
53
blood
53
bodily fluid
42
musculature of body
41
connective tissue
19
artery
18
nerve
18
ureter
13
adipose tissue
11
spleen
8
vein
5
eye
2
embryo
Project
64
AMP
Genome assembly (visualization)
61
GRCh38
58
hg19
Lab
64
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
pCHi-C
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
64 results
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ATAC-seq
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
5
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
kidney epithelial cell
3
1
+ See 13 more…
in vitro differentiated cells
hepatocyte
9
cell line
glomerular visceral epithelial cell
1
See all biosamples
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