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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
5
DNase-seq
1
Hi-C
pCHi-C
Assay category
9
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
2
control
2
transcription factor
Date released
3
August, 2017
3
August, 2021
3
December, 2017
3
November, 2018
2
June, 2019
1
July, 2019
Available data
717
bam
651
bigWig
492
fastq
455
bed narrowPeak
358
bigBed narrowPeak
186
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
15
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
15
Homo sapiens
Biosample type
6
primary cell
6
tissue
3
in vitro differentiated cells
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
26
connective tissue
21
epithelium
18
ureter
13
vasculature
12
liver
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
15
AMP
Genome assembly (visualization)
15
hg19
14
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
1
inconsistent control read length
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
15 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
primary cell
hepatocyte
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
tissue
liver
3
2
right lobe of liver
1
in vitro differentiated cells
pancreatic endoderm
3
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