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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
DNase-seq
69
ChIP-seq
2
ATAC-seq
Assay category
195
DNA accessibility
69
DNA binding
Target of assay
45
transcription factor
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
5
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
66
November, 2017
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
2924
bam
2742
bigWig
1542
bed narrowPeak
1413
tsv
1064
fastq
917
bigBed narrowPeak
307
tagAlign
264
bed broadPeak
253
bigBed broadPeak
225
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
20
hic
18
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
264
Homo sapiens
Biosample type
182
tissue
59
cell line
23
primary cell
Organ
78
kidney
63
liver
47
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
vasculature
13
blood vessel
9
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
264
AMP
Genome assembly (visualization)
248
GRCh38
241
hg19
Lab
262
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
assay_title!
pCHi-C
month_released!
August, 2017
organ_slims!
vasculature
BIOSAMPLE
ASSAY
264 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
58
Panc1
1
primary cell
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the hippocampus
1
+ See 12 more…
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