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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
7
DNase-seq
Assay category
58
DNA binding
7
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
3
November, 2018
2
June, 2019
2
October, 2019
Available data
723
bam
653
bigWig
468
bed narrowPeak
465
fastq
384
bigBed narrowPeak
177
tsv
86
tagAlign
65
bed broadPeak
65
bigBed broadPeak
14
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
65
Homo sapiens
Biosample type
58
cell line
5
tissue
2
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
65
AMP
Genome assembly (visualization)
65
hg19
51
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
13
inconsistent control read length
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
tissue
liver
2
tibial nerve
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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