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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
DNase-seq
4
ChIP-seq
Assay category
13
DNA accessibility
4
DNA binding
Target of assay
4
histone
4
histone modification
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
8
October, 2019
7
June, 2019
2
November, 2017
Available data
222
bam
181
bigWig
155
bed narrowPeak
104
bigBed narrowPeak
72
tsv
17
bed broadPeak
17
bigBed broadPeak
15
bed bed3+
6
tagAlign
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
17
Homo sapiens
Biosample type
10
primary cell
7
tissue
Organ
78
kidney
59
liver
46
musculature of body
44
brain
36
limb
30
heart
21
pancreas
20
epithelium
18
ureter
15
vasculature
12
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
17
AMP
Genome assembly (visualization)
16
hg19
15
GRCh38
Lab
17
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
pCHi-C
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
17 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
tissue
coronary artery
2
tibial artery
2
tibial nerve
2
ascending aorta
1
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