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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
15
ChIP-seq
3
small RNA-seq
2
ATAC-seq
2
WGBS
Assay category
398
Transcription
15
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
12
transcription factor
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
386
February, 2021
15
August, 2017
12
July, 2019
2
October, 2019
1
January, 2018
1
October, 2017
Available data
462
bam
440
bigWig
400
tsv
43
fastq
26
bed narrowPeak
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
Organism
417
Homo sapiens
Biosample type
413
tissue
4
primary cell
Organ
542
connective tissue
532
pancreas
415
adipose tissue
264
liver
225
epithelium
130
heart
96
brain
72
vasculature
71
blood vessel
60
artery
58
bone element
29
embryo
27
kidney
21
musculature of body
7
limb
5
nerve
3
spleen
2
vein
1
blood
1
bodily fluid
1
pericardium
1
pituitary gland
Project
417
AMP
Genome assembly (visualization)
415
hg19
413
GRCh38
Lab
417
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
417 results
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total RNA-seq
ChIP-seq
small RNA-seq
ATAC-seq
WGBS
tissue
adipose tissue
381
1
2
white adipose tissue
12
subcutaneous adipose tissue
6
1
omental fat pad
4
1
1
visceral abdominal adipose tissue
3
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primary cell
endothelial cell of umbilical vein
2
mesenchymal stem cell of adipose
1
1
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