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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
4
total RNA-seq
1
GRO-seq
Assay category
15
DNA binding
4
Transcription
Target of assay
8
histone
8
histone modification
5
control
5
narrow histone mark
3
broad histone mark
2
RNA binding protein
2
transcription factor
Date released
December, 2017
13
February, 2018
6
November, 2017
1
January, 2018
Available data
208
bam
176
bigWig
139
bed narrowPeak
83
bigBed narrowPeak
81
tsv
20
fastq
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
20
Homo sapiens
Biosample type
14
in vitro differentiated cells
6
primary cell
Organ
471
pancreas
402
liver
238
epithelium
100
connective tissue
60
blood
60
bodily fluid
43
adipose tissue
24
spleen
21
brain
14
embryo
6
vasculature
3
blood vessel
2
musculature of body
Project
20
AMP
Genome assembly (visualization)
16
hg19
14
GRCh38
1
hg18
Lab
20
AMP-T2D consortium
assay_title!
pCHi-C
month_released!
December, 2017
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
9
4
1
primary cell
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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