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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
single cell RNA-seq
39
total RNA-seq
pCHi-C
12
ATAC-seq
3
snDrop-seq
2
RNA microarray
Assay category
144
Transcription
12
DNA accessibility
Date released
108
August, 2021
25
February, 2020
16
February, 2023
8
February, 2021
4
December, 2019
Available data
3391
bam
bigWig
1817
bed narrowPeak
1569
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
hic
20
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
0
ibed
Organism
161
Homo sapiens
Biosample type
138
tissue
12
primary cell
9
cell line
2
in vitro differentiated cells
Organ
95
heart
12
brain
10
kidney
10
liver
9
blood vessel
9
vasculature
5
eye
4
artery
3
epithelium
3
limb
2
adipose tissue
2
connective tissue
2
musculature of body
2
pancreas
1
nerve
1
spinal cord
Project
161
AMP
Lab
151
AMP-T2D consortium
10
Bing Ren, UCSD
Audit category:
9
audit script error
9
inconsistent ontology term
assay_title!
pCHi-C
files.file_type!
bigWig
fastq
BIOSAMPLE
ASSAY
161 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
snDrop-seq
RNA microarray
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
5
+ See 41 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
HepG2
9
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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