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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1315total RNA-seq
  • 211single cell RNA-seq
  • pCHi-C
  • 18small RNA-seq
  • 14ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 1544Transcription
  • 14DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 559February, 2021
  • 188May, 2020
  • 173May, 2021
  • 164July, 2018
  • 123August, 2021
  • 89August, 2017
  • 65July, 2019
  • 49April, 2018
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16February, 2023
  • 16October, 2019
  • 15February, 2018
  • 15March, 2020
  • 9December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 3391bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1569tsv
  • 1357fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23hic
  • 20bedpe bed3+
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1569Homo sapiens
Biosample type
  • 1056tissue
  • 270primary cell
  • 129in vitro differentiated cells
  • 114cell line
Organ
  • 476connective tissue
  • 416pancreas
  • 400adipose tissue
  • 172liver
  • 165heart
  • 156epithelium
  • 67blood vessel
  • 67vasculature
  • 58artery
  • 58bone element
  • 24brain
  • 22kidney
  • 14embryo
  • 8musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 1pericardium
  • 1spinal cord
Project
  • 1465AMP
  • 98T1D
  • 6HPAP
Genome assembly (visualization)
  • 1402hg19
  • 1400GRCh38
Lab
  • 1457AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
Audit category:
  • 144inconsistent ontology term
  • 9audit script error
assay_title!
  • pCHi-C
BIOSAMPLE
ASSAY

1569 results

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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
ATAC-seq
WGBS
snDrop-seq
RNA microarray
tissue
adipose tissue381
islet of Langerhans26161
liver1471
bone tissue58
heart left ventricle318
primary cell
monocyte53
pancreatic alpha cell10126
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)32
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1331
HepG214
H1-hESC8
early embryonic cell2
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