Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
3
ATAC-seq
1
MPRA
Assay category
10
Transcription
3
DNA accessibility
Date released
84
February, 2021
7
February, 2023
6
May, 2022
1
October, 2022
Available data
3247
bam
3038
bigWig
1634
bed narrowPeak
1547
tsv
1357
fastq
938
bigBed narrowPeak
398
tagAlign
244
bed broadPeak
207
bigBed broadPeak
bed bed3+
153
zippedFastqFolder
99
txt
32
bed bedMethyl
32
bigBed bedMethyl
22
hic
20
bedpe bed3+
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
csv
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
97
Homo sapiens
Biosample type
94
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
kidney
6
pancreas
4
skeleton
Project
98
AMP
Genome assembly (visualization)
3
hg19
Lab
89
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
assay_title!
pCHi-C
files.file_type!
bed bed3+
organ_slims!
kidney
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
98 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
ATAC-seq
MPRA
tissue
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
See all biosamples
Download