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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
120
total RNA-seq
48
single cell RNA-seq
Assay category
406
DNA binding
168
Transcription
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
713
February, 2021
411
August, 2017
406
November, 2017
382
May, 2021
340
May, 2020
310
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
191
August, 2021
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
32
March, 2020
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
1
May, 2023
Available data
556
bam
498
bigWig
374
fastq
313
bed narrowPeak
312
bigBed narrowPeak
164
tsv
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
574
Homo sapiens
Biosample type
315
cell line
202
tissue
57
primary cell
Organ
315
liver
157
pancreas
91
brain
39
epithelium
6
vasculature
3
blood vessel
2
connective tissue
Project
574
AMP
Genome assembly (visualization)
445
hg19
444
GRCh38
Lab
574
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
assay_title!
pCHi-C
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
574 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
cell line
HepG2
315
tissue
islet of Langerhans
120
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
astrocyte of the cerebellum
3
+ See 13 more…
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