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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
pCHi-C
2
RRBS
1
single cell RNA-seq
1
small RNA-seq
Assay category
123
DNA binding
31
DNA accessibility
19
Transcription
10
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
August, 2021
57
April, 2019
40
May, 2024
33
June, 2019
22
July, 2019
16
May, 2019
8
October, 2019
4
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
160
bigWig
138
bed narrowPeak
135
bam
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
18
tsv
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
186
Homo sapiens
Biosample type
174
tissue
11
primary cell
1
in vitro differentiated cells
Organ
890
pancreas
753
liver
674
connective tissue
518
epithelium
488
adipose tissue
298
heart
284
brain
229
vasculature
blood vessel
222
kidney
158
bone element
139
artery
122
limb
95
musculature of body
61
blood
61
bodily fluid
57
eye
43
nerve
29
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
186
AMP
Genome assembly (visualization)
159
GRCh38
116
hg19
Lab
146
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
assay_title!
pCHi-C
lab.title!
Kyle Gaulton, UCSD
month_released!
August, 2021
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
186 results
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ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
RRBS
single cell RNA-seq
small RNA-seq
tissue
heart left ventricle
35
3
3
4
2
1
1
left cardiac atrium
40
1
heart
14
18
4
1
1
1
1
heart right ventricle
13
1
1
2
1
right atrium auricular region
10
2
3
1
+ See 4 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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