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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
135
total RNA-seq
54
ATAC-seq
18
snATAC-seq
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
146
DNA binding
135
Transcription
72
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
control
5
RNA binding protein
Date released
210
May, 2021
64
May, 2022
45
May, 2020
23
February, 2023
16
January, 2021
Available data
237
bigWig
204
bam
152
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
358
Homo sapiens
Biosample type
220
primary cell
91
tissue
42
in vitro differentiated cells
5
cell line
Organ
51
pancreas
40
liver
8
blood
8
bodily fluid
Project
219
T1D
139
AMP
Genome assembly (visualization)
255
hg19
180
GRCh38
Lab
3514
AMP-T2D consortium
324
Klaus Kaestner, Upenn
318
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
assay_title!
pCHi-C
month_released!
March, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
358 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
30
4
peripheral blood mononuclear cell
8
B cell
2
T follicular helper cell
2
+ See 21 more…
tissue
islet of Langerhans
11
29
6
liver
20
20
pancreas
1
4
in vitro differentiated cells
embryonic stem cell
32
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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