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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
34
ATAC-seq
28
snATAC-seq
20
ChIP-seq
pCHi-C
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
124
Transcription
62
DNA accessibility
20
DNA binding
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
84
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
19
April, 2020
16
January, 2021
Available data
120
bam
106
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
210
Homo sapiens
Biosample type
109
primary cell
70
tissue
27
in vitro differentiated cells
5
cell line
Organ
51
pancreas
19
lung
8
blood
8
bodily fluid
Project
135
T1D
57
AMP
19
LungMap
Genome assembly (visualization)
124
hg19
96
GRCh38
Lab
3028
AMP-T2D consortium
324
Klaus Kaestner, Upenn
192
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
assay_title!
pCHi-C
lab.title!
Karen Mohlke, UNC
target.investigated_as!
histone
BIOSAMPLE
ASSAY
211 results
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total RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
4
3
B cell
2
T follicular helper cell
2
+ See 21 more…
tissue
islet of Langerhans
11
29
6
lung
10
9
pancreas
1
4
in vitro differentiated cells
embryonic stem cell
5
5
17
cell line
EndoC_BH1
3
2
See all biosamples
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