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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
68
total RNA-seq
39
ChIP-seq
33
DNase-seq
13
ATAC-seq
6
Hi-C
5
RRBS
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
71
Transcription
47
DNA accessibility
39
DNA binding
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
150
February, 2021
43
June, 2019
26
August, 2017
10
July, 2019
8
February, 2023
7
May, 2019
4
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
126
bigWig
123
bam
89
txt
68
bed narrowPeak
66
tsv
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
253
Homo sapiens
Biosample type
239
tissue
14
primary cell
Organ
944
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
253
AMP
Genome assembly (visualization)
143
hg19
119
GRCh38
Lab
253
AMP-T2D consortium
Audit category:
93
inconsistent ontology term
1
audit script error
assay_title!
pCHi-C
month_released!
August, 2022
BIOSAMPLE
ASSAY
253 results
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RNA microarray
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
bone element
84
bone tissue
58
skeletal muscle tissue
1
22
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
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primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
1
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