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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
12
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
pCHi-C
1
RNA microarray
Assay category
73
DNA binding
15
Transcription
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
56
bam
43
fastq
39
bigWig
14
tsv
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
102
Homo sapiens
Biosample type
101
tissue
2
primary cell
Organ
913
pancreas
786
liver
492
epithelium
344
kidney
324
heart
284
brain
225
connective tissue
169
vasculature
163
blood vessel
116
limb
103
adipose tissue
95
musculature of body
75
artery
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
bone element
8
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
103
AMP
Genome assembly (visualization)
40
hg19
38
GRCh38
Lab
103
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
pCHi-C
month_released!
February, 2021
organ_slims!
bone element
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
5
1
1
2
subcutaneous adipose tissue
12
5
1
1
1
white adipose tissue
12
adipose tissue
2
1
3
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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